Summer 2017 Highlights

Summer 2017 Highlights

Summer for the Humphries Lab was, unfortunately, not endless. However, much happened over the past few months: Lauren Josephs defended her Master’s thesis, the rest of the crew dispersed across three continents to begin or continue fieldwork, and new lab members arrived at URI including Masters student Melati Kaye and Postdoc Diana Beltrán. Here are some updates:

Lauren and Austin celebrating at Matunuck Oyster Bar after Lauren's defense

Lauren and Austin celebrating at Matunuck Oyster Bar after Lauren's defense

Evans Arizi (PhD Student). As part of Evans’ fieldwork to understand the interaction between sardines and fishing gears, he recruited and trained field assistants for gathering data from eight fishing communities along the entire coast of Ghana in West Africa. In August, Evans was dedicated to carrying out the first official sampling for his dissertation research. He will spend the Fall semester in Ghana collecting data, reviewing literature related to his dissertation, and begin studying for his comprehensive exams.

Elle Wibisono (PhD Student). Elle is back in the The Nature Conservancy's Benoa Fisheries Station (in Bali) with Drs. Peter Mous and Jos Pet, which means debating about details of the project and doing all they can to make it better. Elle has been collecting fishing ledgers from captains and fish traders across Central and Eastern Indonesia. She was unsure how successful this endeavor would be because she was asking captains and fish traders for their bookkeeping. But, for those who actually kept records, Elle and colleagues managed to take pictures and collect data. Obtaining the ledgers mainly involves smiling, a lot, and drinking sweet tea, a lot. Even when the captains and traders did not have ledgers to show, Elle always learned something new while talking to the captains.Elle is spending the Fall semester in Indonesia to continue collecting data and work on finishing the first chapter of her dissertation.

Paul Carvalho (PhD Student). Paul went to Indonesia for the first time this summer to scope study sites for his dissertation research. Due to complications with the never-ending research permit process in Indonesia, Paul spent a week at Bogor Agricultural University working in an office, then traveled to Wakatobi with Austin and Melati to conduct preliminary surveys on reefs on Wangi Wangi, Kaledupa, and Hoga Island. In addition, the National Socio-Environmental Synthesis Center (SESYNC) funded Paul’s Graduate Pursuit team to examine ecological responses to hurricanes, and social/governance systems attempts to transform the qualitative state of coastal ecosystems before and after a hurricane. During Fall semester Paul presents at the Coastal & Estuarine Research Federation conference in Providence, RI, hopes to complete the research permit process, return to Indonesia to collect data for his dissertation, and meet with his SESYNC team in Annapolis MD.

Diky Suganda (PhD Student). Diky spent the summer studying for his comprehensive exams, entering fish landings data from Raja Ampat, Indonesia, and directing a group of enumerators in Raja Ampat for collecting data. Also, Diky harvested tomatoes, parsley, basil, and eggplants from his small garden. This Fall Diky is going to focus on writing his thesis and look for short training courses and workshops to expand his skillset. 

Diky cleaning up the South Kingstown Beach for Save the Bay

Diky cleaning up the South Kingstown Beach for Save the Bay

Melati Kaye (MS Student). Melati spent part of the summer in Wakatobi, off the tip of Southeast Sulawesi in Indonesia, on a scoping trip with Paul and Austin. Her focus was on fish landings data collection protocol and methods. This meant mornings spent leaping from dock to boat deck to fishmonger canoe as she learned the different players in the local fishery, and nights spent with pictures of the day’s catch and the reef fish identification guide learning the diversity of species caught. Melati landed in Rhode Island in early September to start classes. After four years of tropical living in Indonesia, she is excited to get in some leafpeeping during her bicycle commutes to campus. During Fall semester, Melati is taking Fisheries Oceanography and Advanced Ecology, sorting through initial data from Wakatobi, and refining landings data collection protocol.

Katie Viducic (MS Student). This summer, Katie continued to tag blue sharks to gather migration data for her thesis. She tagged sharks 10-50 miles off Narragansett, RI, with dart tags provided by the National Marine Fisheries Service (NMFS). In addition, Katie continued to volunteer for NMFS and travel to shark tournaments throughout New England where she collected samples for diet, reproduction, age, and growth studies. This Fall semester, Katie will continue data analysis, which she started this summer, and begin writing her thesis.

Austin Humphries (Assistant Professor). Austin participated in a workshop at Columbia University on “Sustainable Food Systems Thinking and Teaching – Creating a Community of Practice”. Austin appreciated learning how other professors teach themes and content related to the courses he teaches. Lauren Josephs, the original graduate student in the lab, successfully defended her thesis on what factors contribute to social success for coastal management and restoration. Next, Austin went off to Indonesia for a month, and began the trip with a talk at the US National Academy of Sciences Indonesian-American KAVLI Frontiers of Science Symposium. Then he spent some time with his collaborators at Bogor Agricultural University before getting out in the field with Paul and Melati in Wakatobi. While in the field, the Wakatobi crew (Austin, Melati, and Paul) had success in determining study site locations for collecting data on the coral reefs and fisheries catch in Wangi-Wangi, the most populated island of Wakatobi. With equipment still wet, Austin landed in Rhode Island and completed Year 2 of his kelp monitoring project in Narragansett Bay. Austin is teaching an introductory course this Fall called “Food from the Sea”, which promises to be loads of work, but rewarding.

We welcome Postdoctoral Scholar, Diana Beltrán to the group this semester! Diana uses genetic approaches to study the dispersal of coral reef fishes and how this informs marine conservation and spatial planning. She is starting work in Indonesia this Fall looking at how different fisheries management strategies influence genetic connectivity of fishes. We are also excited to get really cranking on a local hydroacoustic project with menhaden, a pelagic fish that migrates to our Rhode Island coastal waters and bays, as well as the kelp aquaculture project! And last but not least, we can't wait for two new members to show up in Rhode Island at the beginning of next year, Kelvin Gorospe (postdoc) and Celeste Venolia (MS student). Kelvin will be coming from Hawaii and he specializes in coral reef fish and fisheries, while Celeste will be working on the kelp project and recently graduated from Smith College in Northampton, MA. 

Spring 2017 Semester Highlights

Spring 2017 Semester Highlights

The Humphries Lab just wrapped up spring semester at the University of Rhode Island. For some folks, it is the mark of a second semester, for some it is the mark of a second year. Spring is constantly about transitions- the ebbing away of the cold New England frost, the growth of friendship, and the cyclical nature of discovery, mistakes and rediscovery. 

This Spring, as a lab, we discovered a penchant for delectable potato chips (uh-oh), wakame (seaweed) salad, and for Diky’s cooking to fuel our research. But to balance out the junkiness of potato chips, we sacrificed Paul to be our vegan witch.  A lot of things have happened this semester, from an epic bowling night to a hotpot barbecue picnic to papers being published, grants being funded and proposals being…. proposed. Some exciting, some sad, but all are positive. The most important discovery is the bond we share with each other that transcends science and research. The amount of lab love and pride is ridiculous.

Bose headphones are compulsory in the Woodward office.

Bose headphones are compulsory in the Woodward office.

Here is a recap from all members of the Humphries Lab (in order of height):

Lauren Josephs (almost Masters). Code name: Mama Loren, plant whisperer. Lauren is the Humphries Lab OG -- she was at the conception of the Humphries Lab. She is very very close to finishing up her master degree. With her thesis defense looming ahead, she has been working relentlessly, and she spontaneously learned how to use 5+ new software programs in an attempt to analyze her results and make dope figures. But she is not just all about dope figures, she also keeps the plants in our lab alive by moving them around for maximum sunlight exposure in our dark basement office. In addition, she presented results from her thesis at an annual Massachusetts Audubon Society Conference and in NRS seminar. Lauren also participated in the Science March, volunteered for SMILE (an education outreach program), and submitted an abstract to present at the Coastal and Estuary Federation Conference in Providence.

Lauren's farewell haiku:
The Humphries O.G.
Parting is such sweet sorrow
Mad World, here I come

Elle likes lab selfies!

Elle likes lab selfies!

Elle Wibisono (PhD student). Code name: Elle. Elle is finally settling in Rhode Island this semester. She is finally feeling more at home, which means that the quiet shy girl in lab is no longer there. Out goes the shy facade, and in comes the rambunctious cackle. Last spring, she worked on refining the research questions for her dissertation chapters, learned Bayesian statistics, and learned coding in R and Python. As someone with very little to no knowledge in coding, she was constantly amazed by little wins in making sensible plots in R. She presented her research proposal on deep-slope snapper and grouper fisheries in Indonesia. This summer she will be in Bali, Indonesia doing field work and hopefully some cycling and ocean swimming.

Diky (PhD student). Code name: Superdiky. This semester Diky has been spending every waking minute working on his proposal, doing literature review and arranging committee meetings. And cooking. Diky’s food is delectable to say the least. He also introduced the whole lab to Kendric Lamar’s new album, which very quickly became the lab’s research soundtrack. He also coined the lab’s catch phrase: “That’s ok… fine” (said in 10x human speaking speed).  This summer, he will continue to tabulate fieldwork landing/catch data, do data analysis and take his comprehensive exam to advance to candidacy. (Good luck Diky!)

Jack Girard (Undergraduate student). Code name: jack who is john, the dancer. Jack hid his identity as a John the whole semester. As a research assistant, Jack learned how to use R and tinkered with a data set provided by Austin. He filtered, organized, and calculated statistics on Bontosua data and even made figures. Jack graduated this semester and ready to take on the real world. He graduated with a dive regulator as his cord because Jack is quite awesome like that. In addition, Jack is a newly certified SCUBA instructor and received a prestigious award for graduating top of his class in Marine Biology. Jack's memorable moment as part of the Humphries Lab: The look of concern and shock on Elle's face when she learned my name was John and when I almost perfectly hit the regression line for pin the tail on the Donkey.

Jack's farewell haiku:
The Humphries lab wow
Adventurous silly chill
Departing goodbye

Jack diving in Narragansett Bay, RI.

Jack diving in Narragansett Bay, RI.

Katie (Masters student). Superlative: coolest lab member. For those who are unaware, Katie’s research subjects are sharks, which automatically gives her +15 cool points. We would also catch her saying ridiculous things like, “yeah, I’m gonna go dive with some blue sharks”. We are not jealous Katie. We are not. After this semester, she is finally done collecting blue shark vertebrae and aged nearly 230 vertebrae! This summer she will analyze her data and work on the shark migration portion of her thesis. She will also be working on a shark cage diving boat and going to shark tournaments as a volunteer for the National Marine Fisheries Service.

Evans (PhD student). Code name: Evans. He successfully completed his coursework and his research proposal. Evans’s ticket to return to Ghana was contingent upon the acceptance of the research proposal by the graduate school. But to all of our relief, it was accepted, and all is well. Besides conducting research on fish, he teaches the rest of the lab, Ghanian. Evans discovered his love for clam chowder and introduced the lab to delightful Ghanaian food, such as jollof rice. He will be doing his field work over this summer in Ghana (and meet his son for the first time!).

Paul (PhD student). Code name: Don Carvalho, vegan earth child. Paul is excited to be finished with formal coursework and to focus more on his dissertation research. Earlier in the semester, Paul attended a graduate student workshop in Annapolis, Maryland hosted by the National Socio-Environmental Synthesis Center (SESYNC). During the workshop, Paul joined a team of graduate students from various universities to apply for a SESYNC Graduate Student Research Pursuit (fingers crossed!). In addition, Paul received a two-year student research award from The Nature Conservancy Global Marine Initiative Program to conduct fieldwork on fishing gear selectivity on coral reef fish in Indonesia. Paul is excited to embark on his first field season to Indonesia this summer and gather data for his dissertation and be immersed in Indonesian culture.

Crazy Burger outing.

Crazy Burger outing.

Max (Undergraduate student). Code name: MAXIMILIAN BENEDIKT BUCHER (actually just his full name). He has learned the dance of Rstudio called the “frustration No.3 in E(rror) Major”. But through persistence and hard work, he has familiarized himself with R in order to analyze data sets. He also learned about different parameters to analyze coral reef fisheries. This summer Max is going to Ghana to work on the SFMP project and assist Evans with his research. 10/10 always the best dressed in lab, Max graduated this spring and celebrated it with friends and family, and of course, good food. Max received the academic excellence award for graduating at the top of his class. This was a well deserved award as Max consistently challenged himself academically while pursuing multiple research opportunities with other professors. Farewell notes from Max: It was a pleasure working with an intelligent and diverse group of people, who are extremely passionate about their work. Humphries lab moment: The positive, food-filled lab environment.

Austin (Assistant Professor). Austin taught Ecosystem-Based Fisheries Science and Management this semester, which went well and had a full class of graduate students from multiple disciplines. Austin gave two seminars, one at UMass Dartmouth’s School of Marine Science and Technology and the other at the University of New England. He also testified at the US Senate in front of the Appropriations Committee to push for future funding priorities of global fisheries research - this was part of a UN Food and Agricultural Organization series of meetings in DC. In addition, Austin secured a $3 million USAID grant for coral reef fisheries research in Indonesia, which commences this summer and continue through 2021. The focal study sites are located in Nusa Tenggara Barat and Raja Ampat, both located in Eastern Indonesia. Austin is collaborating with Bogor Agricultural University, Udayana University, University of Mataram, and University of Papua as well as the Indonesian Ministry of Marine Affairs and Fisheries and Rare (an NGO). Austin has also been working with John and Cindy West of Cedar Island Oysters on a local research project for kelp aquaculture, which was just funded for 2 years with a NOAA Saltonstall-Kennedy grant. Finally, Austin got another grant to study hydroacoustic sonar in Narragansett Bay to estimate herring and menhaden (pelagic fish) abundance, in collaboration with RI Dept of Environmental Management and FarSounder, an ocean engineering company. As you can see, this summer Austin will be...busy.

That is it for now! Stay tuned for more Humphries Lab updates including the addition of 3 new Postdoctoral Scholars and 2 new graduate students!

 Fall 2016 Semester Highlights

Fall 2016 Semester Highlights

The busiest semester yet for the Humphries Lab is all wrapped up. Fall 2016 ended with a flourish as the crew conquered everything from core classes to proposals and posters. 

Paul (PhD student) completed 9 units towards his doctoral degree and nailed down a dissertation topic. Paul will focus on fish population dynamics and potential conservation benefits under gear-based fisheries management for coral reef fisheries. Over the break Paul will be developing a fisheries model exploring fish population response to different gear types (e.g., spears, traps, nets, etc.). He's applying to participate in a workshop hosted by the National Socio-Environmental Synthesis Center that provides training for working in interdisciplinary teams and developing grant proposals. Paul is also very excited to get back to campus to meet his brand-new, super fast computer and start running multi-day long simulation models. 

Katie (Masters student) worked on her program's core classes while also completing her first round of aging over 200 samples of blue shark vertebrate. She was also active as a volunteer with the National Marine Fisheries Services. Katie will begin a second round of aging her blue shark samples but is first taking the opportunity for some R&R; snorkeling, beaching, and diving in Hawaii.

Galapagos shark captured and released by MS student Katie Viducic for research.

Evans (PhD student) continued to hone skills he'll use in his doctoral work, completing Advanced Ecology and learning to code in R for the Ecological Statistics course. Evans will use the winter break to get his dissertation proposal in final form; his research aims to assess sardine population growth in Ghana under two ecosystem-based fisheries management strategies -- seasonal fishing closures and Marine Protected Areas (or 'no-take' zones).

Elle (PhD student) spent her first semester as a doctoral student trying to internalize the fact that she is, indeed a doctoral student. After the appropriate amount of struggling, Elle is very happy to have passed her first coding class -- Ecological Statistics -- among other required courses. She also taught an Introductory Biology Lab, and has started her own web comic about being a PhD student and an aspiring triathlete. At the end of the semester, Elle returned home to Indonesia to continue work on her research there.

Elle's new creative outlet - comic strips of herself!

Diky (PhD student) spent a large portion of his Fall 2016 semester in Raja Ampat, an Indonesian island chain off the coast of West Papua. While there, Diky worked to build a gonad index for local reef fish and gathered data on fishing practices through interviews with fisherfolk. Working with local community leaders and COREMAP-CTI facilitators, he also helped conduct multiple focus groups and workshops aimed at building local social capacity and training fishers in data collection as well as alternative livelihood skills. Diky is now back in Rhode Island and will use the winter break to read up on current literature and work on finishing his dissertation proposal.

Diky (center in blue shirt) leading a workshop on potential fisheries management solutions for a small village in Raja Ampat, Indonesia.

Lauren (Masters student) finished up her data collection just as the Fall semester began and launched into data analysis while also getting to teach for the first time. Lauren was lucky enough to secure a TA for Marine Biology Lab which came with a healthy number of Fall field trips, including the rocky intertidal at Beavertail State Park, a trawl on URI's research vessel Cap'n Bert, and Connecticut's Mystic Aquarium. She also presented results from her thesis at the Restore America's Estuaries 2016 National Summit in New Orleans, LA. In addition, Lauren ran a booth related to her master's thesis at the Science and Education Fair at the NEOSEC Ocean Literacy Summit in Portland, Maine. Lauren will continue in high gear through the break and into the Spring 2017 semester, drafting a manuscript and preparing for May graduation.

Aditi (Undergraduate student) finished some research on gear selectivity for fisheries on a remote island in Indonesia, and presented a poster on her work as a URI Coastal Fellow at the CELS Coastal and Environmental Fellows research symposium. 

Aditi proudly standing with her poster at the Coastal Fellows symposium.

Austin worked with John and Cindy West of Cedar Island Oysters to start a pilot-level project on growing kelp in an integrated multi-trophic system above oysters. Austin also developed proposals with a wide variety of colleagues for work on coral reef fisheries in Indonesia and across the wider Indo-Pacific, and taught two new courses that required lots of hard work but were also very rewarding. He expects Spring 2017 to bring even more excitement in the classroom as he develops and teaches a new Ecosystem-Based Fisheries Science & Management graduate course with Jeremy Collie. Austin also had to get glasses which brought on many midlife crisis thoughts.

Austin helps deploy a long line for growing kelp with Cindy West of Cedar Island Oysters in Point Judith, Rhode Island.

Though we'll first have to survive the New England winter (Paul for the very first time), the whole Humphries Lab team is looking forward to what awaits in Spring 2017. Jack Girard and Max Bucher, both undergraduates at URI, will join us to conduct independent studies in the lab. Jack in interested in focusing on biogeochemical interactions in coral reef systems as well as relevant statistical analysis techniques, and Max on the impact of selective gear management systems within small-scale fisheries. 

And! Last but not least, the Humphries Lab will be relocating to a fancy new building, the Center for Biology and Life Sciences (CBLS) this semester. We will miss the cozy carpeted feel of Woodward Hall but not the ear-splitting banging of heating pipes. Look for Austin's new office in the first floor wing of CBLS this week. See you all in the New Year!

Work? What work?